Index

A

align_atlas() (in module neuroglancer.atlas) Animal (class in brain.models) animal (neuroglancer.models.NeuroglancerState property) Animal.DoesNotExist Animal.MultipleObjectsReturned AnimalAdmin (class in brain.admin) AnimalChoiceField (class in brain.forms) AnimalDetail (class in brain.views) AnimalForm (class in brain.forms) AnimalForm.Meta (class in brain.forms) AnimalList (class in brain.views) AnimalSerializer (class in brain.serializers) AnnotationLabel (class in neuroglancer.models) AnnotationLabel.DoesNotExist AnnotationLabel.MultipleObjectsReturned

AnnotationLabelAdmin (class in neuroglancer.admin) AnnotationLabelModelSerializer (class in neuroglancer.serializers) AnnotationLabelModelSerializer.Meta (class in neuroglancer.serializers) AnnotationModelSerializer (class in neuroglancer.serializers) AnnotationModelSerializer.Meta (class in neuroglancer.serializers) AnnotationPrivateViewSet (class in neuroglancer.views) AnnotationSearchSerializer (class in neuroglancer.serializers) AnnotationSession (class in neuroglancer.models) AnnotationSession.DoesNotExist AnnotationSession.MultipleObjectsReturned AnnotationSessionAdmin (class in neuroglancer.admin) AnnotationSessionDataSerializer (class in neuroglancer.serializers) AtlasAdminModel (class in brain.admin) AtlasAdminModel.Media (class in brain.admin) AtlasModel (class in brain.models)

B

base_fields (brain.forms.AnimalForm attribute) brain.admin module brain.forms module brain.models module

brain.serializers module brain.views module brain_to_atlas_transform() (in module neuroglancer.atlas) BrainRegion (class in neuroglancer.models) BrainRegion.DoesNotExist BrainRegion.MultipleObjectsReturned

C

CellType (class in neuroglancer.models) CellType.DoesNotExist CellType.MultipleObjectsReturned changelist_view() (brain.admin.SectionAdmin method)

create() (neuroglancer.serializers.NeuroglancerStateSerializer method) create_scene() (in module brain.forms) create_state() (in module neuroglancer.views) created_display() (neuroglancer.admin.AnnotationLabelAdmin method) (neuroglancer.admin.PointsAdmin method)

D

datetime_format() (in module neuroglancer.admin)

declared_fields (brain.forms.AnimalForm attribute)

E

exclude (neuroglancer.serializers.NeuroglancerNoStateSerializer.Meta attribute)

export_as_csv() (brain.admin.ExportCsvMixin method) ExportCsvMixin (class in brain.admin)

F

fields (brain.forms.AnimalForm.Meta attribute) (neuroglancer.serializers.AnnotationLabelModelSerializer.Meta attribute) (neuroglancer.serializers.AnnotationModelSerializer.Meta attribute) (neuroglancer.serializers.NeuroglancerStateSerializer.Meta attribute)

find_closest_neighbor() (in module brain.forms) formfield_for_foreignkey() (brain.admin.AtlasAdminModel method) formfield_overrides (neuroglancer.admin.NeuroglancerStateAdmin attribute) formset (brain.admin.TifInline attribute)

G

get() (brain.views.AnimalDetail method) (brain.views.AnimalList method) (brain.views.ScanResolution method) (neuroglancer.views.AnnotationPrivateViewSet method) (neuroglancer.views.Segmentation method) get_fields() (brain.admin.SlideAdmin method) get_formset() (brain.admin.TifInline method) get_labels() (in module neuroglancer.views) (neuroglancer.admin.AnnotationSessionAdmin method) get_object() (brain.views.AnimalDetail method) get_points_in_session() (in module neuroglancer.admin)

get_queryset() (brain.admin.SectionAdmin method) (brain.admin.SlideAdmin method) (brain.admin.TifInline method) (neuroglancer.admin.AnnotationSessionAdmin method) (neuroglancer.admin.NeuroglancerStateAdmin method) (neuroglancer.admin.PointsAdmin method) (neuroglancer.views.NeuroglancerPublicViewSet method) get_scales() (in module neuroglancer.atlas) get_slide_channels() (in module brain.forms) get_urls() (neuroglancer.admin.AnnotationSessionAdmin method) (neuroglancer.admin.PointsAdmin method)

H

has_add_permission() (brain.admin.LogEntryAdmin method) (brain.admin.SectionAdmin method) (brain.admin.SlideAdmin method) (brain.admin.SlideCziToTifAdmin method) (brain.admin.TifInline method) (neuroglancer.admin.PointsAdmin method) has_change_permission() (brain.admin.LogEntryAdmin method) (brain.admin.SectionAdmin method) (brain.admin.TifInline method) (neuroglancer.admin.PointsAdmin method) has_delete_permission() (brain.admin.LogEntryAdmin method) (brain.admin.SectionAdmin method) (brain.admin.SlideAdmin method) (brain.admin.SlideCziToTifAdmin method) (neuroglancer.admin.PointsAdmin method)

has_view_permission() (brain.admin.LogEntryAdmin method) histogram() (brain.models.Animal method) (brain.models.Section method) Histology (class in brain.models) Histology.DoesNotExist Histology.MultipleObjectsReturned HistologyAdmin (class in brain.admin)

I

image_list() (in module brain.views) image_tag() (brain.models.Section method) Injection (class in brain.models) Injection.DoesNotExist Injection.MultipleObjectsReturned

InjectionAdmin (class in brain.admin) InjectionVirus (class in brain.models) InjectionVirus.DoesNotExist InjectionVirus.MultipleObjectsReturned InjectionVirusAdmin (class in brain.admin) is_active() (brain.admin.AtlasAdminModel method)

L

lab (neuroglancer.models.NeuroglancerState property) label_from_instance() (brain.forms.AnimalChoiceField method) label_type() (neuroglancer.admin.AnnotationSessionAdmin method) LabelSerializer (class in neuroglancer.serializers) list_display (neuroglancer.admin.AnnotationLabelAdmin attribute) (neuroglancer.admin.AnnotationSessionAdmin attribute) (neuroglancer.admin.NeuroglancerStateAdmin attribute) (neuroglancer.admin.PointsAdmin attribute)

list_display_links (brain.admin.SectionAdmin attribute) list_filter (neuroglancer.admin.AnnotationLabelAdmin attribute) (neuroglancer.admin.AnnotationSessionAdmin attribute) (neuroglancer.admin.NeuroglancerStateAdmin attribute) (neuroglancer.admin.PointsAdmin attribute) list_per_page (neuroglancer.admin.NeuroglancerStateAdmin attribute) LogEntryAdmin (class in brain.admin)

M

make_active() (in module neuroglancer.admin) make_inactive() (in module neuroglancer.admin) make_ontology_graph_CCFv3() (in module neuroglancer.atlas) make_ontology_graph_pma() (in module neuroglancer.atlas) max_scene() (brain.models.SlideCziToTif method) media (brain.forms.AnimalForm property) (neuroglancer.admin.AnnotationLabelAdmin property) (neuroglancer.admin.AnnotationSessionAdmin property) (neuroglancer.admin.NeuroglancerStateAdmin property) (neuroglancer.admin.PointsAdmin property) model (brain.admin.TifInline attribute) (neuroglancer.serializers.AnnotationLabelModelSerializer.Meta attribute) (neuroglancer.serializers.AnnotationModelSerializer.Meta attribute) (neuroglancer.serializers.NeuroglancerNoStateSerializer.Meta attribute) (neuroglancer.serializers.NeuroglancerStateSerializer.Meta attribute)

module brain.admin brain.forms brain.models brain.serializers brain.views neuroglancer.admin neuroglancer.atlas neuroglancer.models neuroglancer.serializers neuroglancer.tests neuroglancer.views

N

neuroglancer.admin module neuroglancer.atlas module neuroglancer.models module neuroglancer.serializers module neuroglancer.tests module neuroglancer.views module

NeuroglancerNoStateSerializer (class in neuroglancer.serializers) NeuroglancerNoStateSerializer.Meta (class in neuroglancer.serializers) NeuroglancerPrivateViewSet (class in neuroglancer.views) NeuroglancerPublicViewSet (class in neuroglancer.views) NeuroglancerState (class in neuroglancer.models) NeuroglancerState.DoesNotExist NeuroglancerState.MultipleObjectsReturned NeuroglancerStateAdmin (class in neuroglancer.admin) NeuroglancerStateSerializer (class in neuroglancer.serializers) NeuroglancerStateSerializer.Meta (class in neuroglancer.serializers)

O

open_multiuser() (neuroglancer.admin.NeuroglancerStateAdmin method) open_neuroglancer() (neuroglancer.admin.NeuroglancerStateAdmin method) ordering (neuroglancer.admin.AnnotationLabelAdmin attribute) (neuroglancer.admin.AnnotationSessionAdmin attribute) (neuroglancer.admin.NeuroglancerStateAdmin attribute) (neuroglancer.admin.PointsAdmin attribute) (neuroglancer.serializers.NeuroglancerNoStateSerializer.Meta attribute) (neuroglancer.serializers.NeuroglancerStateSerializer.Meta attribute)

P

pagination_class (neuroglancer.views.NeuroglancerPublicViewSet attribute) permission_classes (neuroglancer.views.NeuroglancerPublicViewSet attribute) (neuroglancer.views.Segmentation attribute) Points (class in neuroglancer.models) Points.DoesNotExist Points.MultipleObjectsReturned

PointsAdmin (class in neuroglancer.admin) post() (neuroglancer.views.AnnotationPrivateViewSet method) prep_id() (brain.admin.InjectionVirusAdmin method) (brain.admin.SlideAdmin method) public_description() (neuroglancer.admin.NeuroglancerStateAdmin method) put() (neuroglancer.views.AnnotationPrivateViewSet method)

Q

queryset (neuroglancer.views.AnnotationPrivateViewSet attribute) (neuroglancer.views.NeuroglancerPrivateViewSet attribute)

R

readonly_fields (neuroglancer.admin.AnnotationLabelAdmin attribute) (neuroglancer.admin.AnnotationSessionAdmin attribute) (neuroglancer.admin.NeuroglancerStateAdmin attribute) (neuroglancer.admin.PointsAdmin attribute)

remove_scene() (in module brain.forms) repeat_scene() (in module brain.forms) response_change() (brain.admin.SlideAdmin method)

S

save_existing() (brain.forms.TifInlineFormset method) save_model() (brain.admin.SlideAdmin method) save_neuroglancer_state() (neuroglancer.serializers.NeuroglancerStateSerializer method) save_slide_model() (in module brain.forms) ScanResolution (class in brain.views) ScanRun (class in brain.models) ScanRun.DoesNotExist ScanRun.MultipleObjectsReturned ScanRunAdmin (class in brain.admin) scene() (brain.models.Section method) scene_count() (brain.admin.SlideAdmin method) scene_image() (brain.admin.TifInline method) scene_reorder() (in module brain.forms) search_annotation() (in module neuroglancer.views) search_fields (neuroglancer.admin.AnnotationLabelAdmin attribute) (neuroglancer.admin.AnnotationSessionAdmin attribute) (neuroglancer.admin.NeuroglancerStateAdmin attribute) (neuroglancer.admin.PointsAdmin attribute) search_label() (in module neuroglancer.views) SearchSessions (class in neuroglancer.models) SearchSessions.DoesNotExist SearchSessions.MultipleObjectsReturned Section (class in brain.models)

Section.DoesNotExist Section.MultipleObjectsReturned section_image() (brain.admin.TifInline method) section_number() (brain.admin.SectionAdmin method) SectionAdmin (class in brain.admin) SectionAdmin.Media (class in brain.admin) Segmentation (class in neuroglancer.views) serializer_class (neuroglancer.views.NeuroglancerPrivateViewSet attribute) (neuroglancer.views.NeuroglancerPublicViewSet attribute) set_end() (in module brain.forms) set_scene_active_inactive() (in module brain.forms) setUp() (neuroglancer.tests.TestSetUp method) show_points() (neuroglancer.admin.AnnotationSessionAdmin method) (neuroglancer.admin.PointsAdmin method) show_points_without_link() (neuroglancer.admin.AnnotationSessionAdmin method) Slide (class in brain.models) slide() (brain.models.Section method) Slide.DoesNotExist Slide.MultipleObjectsReturned SlideAdmin (class in brain.admin) SlideCziToTif (class in brain.models) SlideCziToTif.DoesNotExist SlideCziToTif.MultipleObjectsReturned SlideCziToTifAdmin (class in brain.admin)

T

test_annotations_new_id() (neuroglancer.tests.TestAnnotations method) test_annotations_new_noid() (neuroglancer.tests.TestAnnotations method) test_annotations_save() (neuroglancer.tests.TestAnnotations method) test_get_annotation_pre() (neuroglancer.tests.TestAnnotations method) test_get_label() (neuroglancer.tests.TestAnnotations method) test_get_label_empty() (neuroglancer.tests.TestAnnotations method) test_search_annotations_ending_slash() (neuroglancer.tests.TestAnnotations method)

test_search_annotations_no_ending_slash() (neuroglancer.tests.TestAnnotations method) test_search_labels() (neuroglancer.tests.TestAnnotations method) test_segmentation() (neuroglancer.tests.TestAnnotations method) TestAnnotations (class in neuroglancer.tests) TestSetUp (class in neuroglancer.tests) tif() (brain.models.Section method) TifInline (class in brain.admin) TifInlineFormset (class in brain.forms)

U

umeyama() (in module neuroglancer.atlas)

update() (neuroglancer.serializers.NeuroglancerStateSerializer method)

V

view_points_3Dgraph() (neuroglancer.admin.PointsAdmin method) view_points_data() (neuroglancer.admin.PointsAdmin method) view_points_in_session() (neuroglancer.admin.AnnotationSessionAdmin method) Virus (class in brain.models)

Virus.DoesNotExist Virus.MultipleObjectsReturned virus_name() (brain.admin.InjectionVirusAdmin method) VirusAdmin (class in brain.admin)