Preprocessing pipeline

Brain data ingestion processing steps
Masking scripts
Pipeline scripts
Registration scripts
Pipeline Utilities
High level description of the preprocessing pipeline
Overview of the pipeline utility process
Software installation
Running the entire process - HOWTO
Database models
SQL Controllers
File manipulation modules
Cell labeling scripts

Brainsharer Pipeline

Masking scripts
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Masking scripts

This program deals with mask training and prediction.

python src/pipeline/scripts/create_masks.py –animal DKXX –task

Explanation for the tasks:

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