Preprocessing pipeline

Brain data ingestion processing steps
Masking scripts
Pipeline scripts
Registration scripts
Pipeline Utilities
High level description of the preprocessing pipeline
Overview of the pipeline utility process
Software installation
Running the entire process - HOWTO
Database models
SQL Controllers
File manipulation modules
Cell labeling scripts

Brainsharer Pipeline

Database models
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Database models

The database models provide an object oriented method to access the database tables.

Database models

Animal
Atlas model
Elastix transformation
Histology
Scan run
Slide

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