Slide

class library.database_model.slide.Section(**kwargs)

Bases: Base, AtlasModel

This class describes a view and not an actual database table. This table provides the names, locations and ordering of the TIFF files.

FK_slide_id

active

channel

channel_index

created

czi_file

file_name

id

prep_id

scene_index

scene_number

slide_physical_id

tif_id

class library.database_model.slide.Slide(**kwargs)

Bases: Base, AtlasModel

This class describes an individual slide. Each slide usually has 4 scenes (pieces of tissue). This is the parent class to the TIFF (SlideCziToTif) class.

active

checksum

comments

created

file_name

file_size

id

insert_before_one

insert_between_five_six

insert_between_four_five

insert_between_one_two

insert_between_three_four

insert_between_two_three

processed

scan_run_id

scene_qc_1

scene_qc_2

scene_qc_3

scene_qc_4

scene_qc_5

scene_qc_6

scenes

slide_physical_id

slide_status

class library.database_model.slide.SlideCziTif(**kwargs)

Bases: Base, AtlasModel

This is the child class of the Slide class. This model describes the metadata associated with a TIFF file, or another way to think of it, it describes one piece of brain tissue on a slide.

FK_slide_id

active

channel

comments

created

czifile

file_name

file_size

height

id

processing_duration

scene_index

scene_number

width